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X home $ n d wX m Macintosh HD:Users:martajelitai:Documents:data awake:IN-awake summary:MI_speed: Macintosh HD H+ /\MI_speed XwK IN-awake summary m = /\ E A NMacintosh HD:Users:martajelitai:Documents:data awake:IN-awake summary:MI_speed M I _ s p e e d M a c i n t o s h H D AUsers/martajelitai/Documents/data awake/IN-awake summary/MI_speed / E NMPath g d m Macintosh HD:Applications:Igor Pro 6.1:Igor Procedures:NeuroMatic_v2_00: Macintosh HD H+ NeuroMatic_v2_00 ʧ Igor Procedures m ʋv
l q GMacintosh HD:Applications:Igor Pro 6.1:Igor Procedures:NeuroMatic_v2_00 " N e u r o M a t i c _ v 2 _ 0 0 M a c i n t o s h H D :Applications/Igor Pro 6.1/Igor Procedures/NeuroMatic_v2_00 / RecentWindows Advanced Topics.ihf Analysis.ihf CVAnalysisForIan2.ipf Dialog Help.ihf Errors.ihf F0 : nm_folder0 Getting Started.ihf Graph0:freq vs speed;fit_freq Table0:speed,MI,freq 4 Misc_End XOPState_Start Data Browser p e e d , M I , Gizmo q n2.ipf Dialog HePeakFunctions2 f F0 : nm_folderGBLoadWave ` @!5 Surface Plotter req Table0:speedInterpolate Data Browser root A 4 XOPState_End \ rmBVA g
Started NeuroMatic Version 2.00
Rename wave0,speed; Rename wave1,MI; Rename wave2,fr;
Rename fr,freq;
Display freq vs speed
DeletePoints 0,69, speed,MI,freq
Display freq vs speed
SetAxis bottom 0,10
ModifyGraph mode=3,marker=19,msize=3.5,rgb=(0,6405,26214)
CurveFit/NTHR=0/TBOX=768 line freq /X=speed /D
fit_freq= W_coef[0]+W_coef[1]*x
W_coef={54.358,3.0857}
V_chisq= 472315;V_npnts= 470;V_numNaNs= 0;V_numINFs= 0;
V_startRow= 0;V_endRow= 469;V_q= 1;V_Rab= -0.857226;
V_Pr= 0.217309;
W_sigma={2.85,0.641}
Coefficient values one standard deviation
a =54.358 2.85
b =3.0857 0.641
TextBox/K/N=CF_freq
CurveFit/NTHR=0/TBOX=768 exp_XOffset freq /X=speed /D
Fit converged properly
fit_freq= W_coef[0]+W_coef[1]*exp(-(x-W_fitConstants[0])/W_coef[2])
W_coef={94.214,-38.085,8.1677}
W_fitConstants={1.004}
V_chisq= 472266;V_npnts= 470;V_numNaNs= 0;V_numINFs= 0;
V_startRow= 0;V_endRow= 469;
W_sigma={38.8,37.1,12.5}
Coefficient values one standard deviation
y0 =94.214 38.8
A =-38.085 37.1
tau =8.1677 12.5
Constant:
X0 =1.00401
TextBox/K/N=CF_freq
! WinGlobals X ! Y
Packages s X ! Y Configurations X ! Y rmBVA FileType 2.Y
r NMConfig NeuroMatic ons X ! DY rmBVA AutoStart ? AutoPlot NameFormat ? WriteHistory ? CmdHistory ? ImportPrompt ? OverWrite ? FileType 2.Y x
r x NMConfigD_AutoStart Y x
r x Auto-start NM (0) no (1) yesD_AutoPlot Y x
r x/ Auto plot data upon loading file (0) no (1) yesD_NameFormat Y x
r x# Wave name format (0) short (1) longD_WriteHistory Y x
r x? Analysis history (0) off (1) Igor History (2) notebook (3) bothD_CmdHistory y Y x
r x> Command history (0) off (1) Igor History (2) notebook (3) bothD_ImportPrompt Y x
r x Import prompt (0) off (1) onD_OverWrite pt Y x
r x Over-write (0) off (1) onOrderWavesBy t Y x
r x nameD_OrderWavesBy Y x
r x( Order waves by "name" or creation "date"FolderPrefix y Y x
r x nmD_FolderPrefix Y x
r x NM folder prefixPrefixList fix Y x
r x Record;Avg_;D_PrefixList x Y x
r x List of wave prefix namesNMTabList st x Y x
r x Main;Stats;Spike;Event;Fit;D_NMTabList x Y x
r x List of NM tabsOpenDataPath x Y x
r x D_OpenDataPath Y x
r x, Open data file path (i.e. C:Jason:TestData:)SaveDataPath h Y x
r x D_SaveDataPath Y x
r x, Save data file path (i.e. C:Jason:TestData:)
Main Matic ons X ! pY
rmBVA Bsln_Method ? Bsln_Bgn Bsln_End $@ AvgMode @ AvgDisplay ? AvgChanFlag AskAvgAllGrps AvgAllGrps AvgGrpDisplay ? SmoothNum ? CopyTbgn CopyTend CopySelect ? ScaleByNumVal ? ScaleByWaveMthd AlignPosTime ? AlignInterp FileType 2.Y x
r NMConfigD_Bsln_Method Y x
r B (1) subtract wave's individual mean (2) subtract mean of all wavesD_Bsln_Bgn od Y x
r Baseline window begin (ms)D_Bsln_End od Y x
r Baseline window end (ms)D_AvgMode od Y x
r 6 (1) mean (2) mean + stdv (3) mean + var (4) mean + semD_AvgDisplay Y x
r / display data waves with results? (0) no (1) yesD_AvgChanFlag Y x
r + use channel smooth and F(t)? (0) no (1) yesD_AskAvgAllGrps Y x
r 4 prompt user for averaging all groups? (0) no (1) yesD_AvgAllGrps ps Y x
r " average all groups? (0) no (1) yesD_AvgGrpDisplay Y x
r + display groups in same plot? (0) no (1) yesD_SmoothNum lay Y x
r % Number of smoothing points/operationsSmoothAlg m lay Y x
r binomialD_SmoothAlg lay Y x
r 2 Smoothing algorithm (binomial, boxcar, polynomial)D_CopyTbgn lay Y x
r Copy source waves from (msD_CopyTend lay Y x
r Copy source waves to (msD_CopySelect ay Y x
r . Select copied waves as current? (0) no (1) yesScaleByNumAlg y Y x
r *D_ScaleByNumAlg Y x
r & Scale by number algorithm (*, /, +, -)D_ScaleByNumVal Y x
r Scale by number valueD_ScaleByWaveMthd x
r 6 (0) none (1) scale by wave of values (2) scale by waveScaleByWaveAlg hd x
r *D_ScaleByWaveAlg x
r $ Scale by wave algorithm (*, /, +, -)D_AlignPosTime g x
r / Allow only positive time values? (0) no (1) yesD_AlignInterp g x
r : make alignments permanent by interpolation? (0) no (1) yes
Stats atic ons X ! Y rmBVA AutoPlot ? TablesOn ? FileType 2.Y x
r NMConfigD_AutoPlot .Y x
r Stats2 auto plot (0) off (1) onD_TablesOn .Y x
r 0 Display Stats1 results in tables? (0) no (1) yesAmpColor n .Y x
r 65535,0,0D_AmpColor .Y x
r Amp display rgb colorBaseColor .Y x
r 0,39168,0D_BaseColor Y x
r Baseline display rgb colorRiseColor r Y x
r 0,0,65535D_RiseColor Y x
r Rise/decay display rgb color @ 3 ( Y77
AmpSlct Y
? ? ? ? Y YSource:AmpSlct
Type:NMStats
Description:Measurement ; | XYAmpB
? 7 7 0 Source:AmpB
Type:NMStats
Description:Window begin time (ms) 9 > YAmpE
? 7 7 0 Source:AmpE
Type:NMStats
Description:Window end time (ms) E Ɔ YBflag
? 7 7 0 Source:Bflag
Type:NMStats
Description:Compute baseline (0) no (1) yes 6@ = ( Y77
BslnSlct Y
? ? ? ? Y YSource:BslnSlct
Type:NMStats
Description:Baseline measurement > l YBslnB
? 7 7 0 Source:BslnB
Type:NMStats
Description:Baseline begin time (ms) < l YBslnE
? 7 7 0 Source:BslnE
Type:NMStats
Description:Baseline end time (ms) N O YBslnSubt
? 7 7 0 Source:BslnSubt
Type:NMStats
Description:Baseline auto subtract (0) no (1) yes R YBslnRflct
? 7 7 0 Source:BslnRflct
Type:NMStats
Description:Baseline reflected window (0) off (1) on 8 + YRiseBP
? 7 7 A A A A A A A A A A 0 Source:RiseBP
Type:NMStats
Description:Rise-time begin % 6 $ YRiseEP
? 7 7 B B B B B B B B B B 0 Source:RiseEP
Type:NMStats
Description:Rise-time end % - Vi YDcayP
? 7 7 B B B B B B B B B B 0 Source:DcayP
Type:NMStats
Description:Decay %
W ^ YdtFlag
? 7 7 0 Source:dtFlag
Type:NMStats
Description:F(t) (0) none (1) d/dt (2) dd/dt*dt (3) integral 5 YSmthNum
? 7 7 0 Source:SmthNum
Type:NMStats
Description:Smooth number @ 8 ( $Y77
SmthAlg Y
? ? ? ? Y YSource:SmthAlg
Type:NMStats
Description:Smooth algorithm = 8 YChanSelect
? 7 7 0 Source:ChanSelect
Type:NMStats
Description:Channel to analyze @ \ ( Main,MN_;Stats,ST_;Spike,SP_;Event,EV_;Fit,FT_;NMPanel,NM_Tab;CurrentNMTabList
r Main;Stats;Spike;Event;Fit; qJ 0Y67Ѐ FolderList Y ? ? ? ? ,Ynm_folder0
Main Matic ons X ! 0Y rmBVA Bsln_Method ? Bsln_Bgn Bsln_End $@ AvgMode @ AvgDisplay ? AvgChanFlag AskAvgAllGrps AvgAllGrps AvgGrpDisplay ? SmoothNum ? CopyTbgn CopyTend CopySelect ? ScaleByNumVal ? ScaleByWaveMthd AlignPosTime ? AlignInterp SmoothAlg 2.Y
r binomialScaleByNumAlg Y
r *ScaleByWaveAlg Y
r *
Stats atic ons X ! 4Y rmBVA AmpNV AmpBV AmpEV AmpYV AmpXV BslnYV RiseTV Ft SmoothN TablesOn ? AutoPlot ? ST_2AVG ST_2SDV ST_2SEM ST_2CNT AmpYVS 2.Y
r BslnXVS 2.Y
r SmoothA 2.Y
r AmpColor 2.Y
r 65535,0,0BaseColor 2.Y
r 0,39168,0RiseColor 2.Y
r 0,0,65535ST_2WaveSlct Y
r ST_2StrMatch Y
r ST_*ST_2MatchSlct Y
r Stats1 R@ 3 ( Y77
AmpSlct 4Y
? ? ? ? dY YSource:AmpSlct
Type:NMStats
Description:Measurement ; t `YAmpB
? 7 7 0 Source:AmpB
Type:NMStats
Description:Window begin time (ms) 9 ^ xYAmpE
? 7 7 0 Source:AmpE
Type:NMStats
Description:Window end time (ms) / YAmpY
? 7 7 0 + YAmpX
? 7 7 0 E v YBflag
? 7 7 0 Source:Bflag
Type:NMStats
Description:Compute baseline (0) no (1) yes 9@ = ( Y77
BslnSlct 4Y
? ? ? ? Y YSource:BslnSlct
Type:NMStats
Description:Baseline measurement > m YBslnB
? 7 7 0 Source:BslnB
Type:NMStats
Description:Baseline begin time (ms) < m YBslnE
? 7 7 0 Source:BslnE
Type:NMStats
Description:Baseline end time (ms) N YBslnSubt
? 7 7 0 Source:BslnSubt
Type:NMStats
Description:Baseline auto subtract (0) no (1) yes R YBslnRflct
? 7 7 0 Source:BslnRflct
Type:NMStats
Description:Baseline reflected window (0) off (1) on m YBslnY
? 7 7 0 m YBslnX
? 7 7 0 8 + YRiseBP
? 7 7 A A A A A A A A A A 0 Source:RiseBP
Type:NMStats
Description:Rise-time begin % 6 % YRiseEP
? 7 7 B B B B B B B B B B 0 Source:RiseEP
Type:NMStats
Description:Rise-time end % ( YRiseBX
? 7 7 0 ( YRiseEX
? 7 7 0 $YRiseTm
? 7 7 0 - &j (YDcayP
? 7 7 B B B B B B B B B B 0 Source:DcayP
Type:NMStats
Description:Decay % r ,YDcayX
? 7 7 0 r 0YDcayT
? 7 7 0
W * 4YdtFlag
? 7 7 0 Source:dtFlag
Type:NMStats
Description:F(t) (0) none (1) d/dt (2) dd/dt*dt (3) integral 5 8YSmthNum
? 7 7 0 Source:SmthNum
Type:NMStats
Description:Smooth number d@ 8 ( HY77
SmthAlg 4Y
? ? ? ? Y DYSource:SmthAlg
Type:NMStats
Description:Smooth algorithm )@ \ ( PY77
OffsetW 4Y
? ? ? ? Y LYSource:OffsetW
Type:NMStats
Description:Offset wave name (/g for group num, /w for wave num) D Y77 EV_ThisY Y ? ? ? ? (
Fit t atic ons X ! tY d rmBVA UserInput Tbgn Tend Cursors FitAuto FitNumPnts MaxIterations D@ SaveFitWaves ? FullGraphWidth Print ? WeightStdv Function 2.Y
r FxnShort 2.Y
r Equation 2.Y
r FxnList 2.Y
r f:Line,n:2;f:Poly,n:3;f:Gauss,n:4;f:Lor,n:4;f:Exp,n:3;f:DblExp,n:5;f:Exp_XOffset,n:3;f:DblExp_XOffset,n:5;f:Sin,n:4;f:HillEquation,n:4;f:Sigmoid,n:4;f:Power,n:3;f:LogNormal,n:4;UserFxnList Y
r # f:NMBekkers2,n:8;f:NMBekkers3,n:10;Xwave nList Y
r
nm_folder0 ons X ! Y
$
rmBVA FileFormat @ FileDateTime }?G_ A NumWaves TotalNumWaves SamplesPerWave SampleInterval ? CurrentWave NumActiveWaves WaveSkip ? NumChannels CurrentChan NumGrps CurrentGrp SumSet1 SumSet2 SumSetX V_Flag @ V_siga @ V_sigb w? V_chisq & A V_q ? V_Rab 4+en V_Pr X)? V_numNaNs V_numINFs V_npnts `}@ V_nterms @ V_nheld V_startRow V_endRow P}@ V_startCol V_endCol V_startLayer V_endLayer V_startChunk V_endChunk FileName 2.
r
nm_folder0CurrentFile
r FileType le
r NMDataAcqMode le
r FileDate le
r Sun, Jan 25, 2015FileTime le
r 19:53:28WavePrefix
r RecordCurrentPrefix
r xLabel Prefix
r msecS_waveNames x
r wave0;wave1;wave2;S_path ames x
r S_fileName x
r ClipboardS_info ame x
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CuU @ 0 8 j C `Yfit_freq N+? -l? h h yL@t+L@z >FL@u`L@*&_{L@D^L@SSL@w9L@3DL@D L@ gEM@YzP0M@ JM@zLcM@ \|M@ӝIM@?= M@0YM@=M@!M@|*BN@kV'N@_fP?N@~W`WN@ &8oN@P-N@$UN@*17۵N@; N@ N@= N@+;O@_`(O@Eo?O@JUO@PkO@ʕO@.FUO@Z_
O@|VO@x0O@:H$O@8BMP@;Ad P@91P@p #"P@um֢,P@xu7P@BtAP@;KP@妢
VP@@`P@K kgjP@&tP@ö ~P@BP@LtP@@y(KTP@qݹQ&P@KBtP@
gƠP@[IP@/GP@]qP@~GpP@'ncP@-P@[ P@kQ@y8|Q@S@ DS@{W/JS@ Z=7PS@BbG6VS@u}-\S@܅bS@hS@G4mS@ sS@IyS@G?GS@ ƍ S@u>S@~VeS@ S@,JS@#/1;S@:ǦS@QLS@]ʱS@] [?S@S@?bS@~AqS@=\S@W&S@K!^S@gS@\S@S' S@ICY03S@HaUS@bqS@S@N, T@cT@"
Button NM_JumpFwd,help={"next wave"},fSize=14
Slider NM_WaveSlide,pos={85,93},size={61,16},proc=NMWaveSlide
Slider NM_WaveSlide,limits={0,-1,1},variable= root:nm_folder0:CurrentWave,side= 2,vert= 0,ticks= 0
PopupMenu NM_SkipMenu,pos={9,92},size={32,20},bodyWidth=20,proc=NMPopupSkip,title="+"
PopupMenu NM_SkipMenu,help={"wave increment"},fSize=14
PopupMenu NM_SkipMenu,mode=1,popvalue=" ",value= #"\" ;Wave Increment = 1;Wave Increment > 1;As Wave Select;\""
GroupBox NM_ChanWaveGroup,pos={0,123},size={300,39}
GroupBox NM_ChanWaveGroup,labelBack=(43520,48896,65280)
PopupMenu NM_ChanMenu,pos={9,132},size={62,20},bodyWidth=45,proc=NMPopupChan,title="Ch"
PopupMenu NM_ChanMenu,help={"limit channels to analyze"},fSize=11
PopupMenu NM_ChanMenu,mode=3,popvalue="A",value= #"\"Channel;---;A;\""
PopupMenu NM_WaveMenu,pos={82,132},size={168,20},bodyWidth=130,proc=NMPopupWaveSelect,title="Waves"
PopupMenu NM_WaveMenu,help={"limit waves to analyze"},fSize=11
PopupMenu NM_WaveMenu,mode=1,popvalue="All",value= #"UpdateNMWaveSelectStr()"
SetVariable NM_WaveCount,pos={255,134},size={40,18},title=" "
SetVariable NM_WaveCount,help={"number of currently selected waves"}
SetVariable NM_WaveCount,labelBack=(43520,48896,65280),fSize=11,frame=0
SetVariable NM_WaveCount,limits={0,inf,0},value= root:nm_folder0:NumActiveWaves
SetVariable NM_Set1Cnt,pos={255,63},size={40,18},title=" "
SetVariable NM_Set1Cnt,help={"number of Set1 waves"},fSize=11,frame=0
SetVariable NM_Set1Cnt,limits={0,inf,0},value= root:nm_folder0:SumSet1
SetVariable NM_Set2Cnt,pos={255,81},size={40,18},title=" "
SetVariable NM_Set2Cnt,help={"number of Set2 waves"},fSize=11,frame=0
SetVariable NM_Set2Cnt,limits={0,inf,0},value= root:nm_folder0:SumSet2
SetVariable NM_SetXCnt,pos={255,99},size={40,18},title=" "
SetVariable NM_SetXCnt,help={"number of SetX waves"},fSize=11,frame=0
SetVariable NM_SetXCnt,limits={0,inf,0},value= root:nm_folder0:SumSetX
CheckBox NM_Set1Check,pos={205,65},size={50,15},proc=NMSetsCheckBox,title="Set1 :"
CheckBox NM_Set1Check,help={"include in Set1"},fSize=11,value= 0
CheckBox NM_Set2Check,pos={205,83},size={50,15},proc=NMSetsCheckBox,title="Set2 :"
CheckBox NM_Set2Check,help={"include in Set2"},fSize=11,value= 0
CheckBox NM_SetXCheck,pos={205,101},size={50,15},proc=NMSetsCheckBox,title="SetX :"
CheckBox NM_SetXCheck,help={"exclude from all analyses"},fSize=11,value= 0
TabControl NM_Tab,pos={0,170},size={300,640},proc=NMTabControl
TabControl NM_Tab,labelBack=(43690,43690,43690),fSize=11,tabLabel(0)="Main"
TabControl NM_Tab,tabLabel(1)="Stats",tabLabel(2)="Spike",tabLabel(3)="Event"
TabControl NM_Tab,tabLabel(4)="Fit",value= 0
Button MN_Plot,pos={40,220},size={100,20},proc=MainTabButton,title="Plot"
Button MN_Plot,fSize=11
Button MN_Copy,pos={160,220},size={100,20},proc=MainTabButton,title="Copy"
Button MN_Copy,fSize=11
Button MN_Baseline,pos={40,265},size={100,20},proc=MainTabButton,title="Baseline"
Button MN_Baseline,fSize=11
Button MN_Average,pos={160,265},size={100,20},proc=MainTabButton,title="Average"
Button MN_Average,fSize=11
Button MN_YScale,pos={40,310},size={100,20},proc=MainTabButton,title="Scale"
Button MN_YScale,fSize=11
Button MN_XAlign,pos={160,310},size={100,20},proc=MainTabButton,title="Align"
Button MN_XAlign,fSize=11
Button MN_ReOrder,pos={100,355},size={100,20},proc=MainTabButton,title="Order Waves"
Button MN_ReOrder,fSize=11
GroupBox MN_Group,pos={20,395},size={260,130},title="More...",fSize=11
PopupMenu MN_DisplayMenu,pos={41,430},size={100,20},bodyWidth=100,proc=MainTabPopup
PopupMenu MN_DisplayMenu,fSize=11
PopupMenu MN_DisplayMenu,mode=1,popvalue="Display",value= #"\"Display;---;Plot ;Table;XLabel;YLabel;Print Names;Print Notes;Order Waves;\""
PopupMenu MN_EditMenu,pos={161,430},size={100,20},bodyWidth=100,proc=MainTabPopup
PopupMenu MN_EditMenu,fSize=11
PopupMenu MN_EditMenu,mode=1,popvalue="Edit",value= #"\"Edit;---;Copy;Rename;Kill;\""
PopupMenu MN_TScaleMenu,pos={41,475},size={100,20},bodyWidth=100,proc=MainTabPopup
PopupMenu MN_TScaleMenu,fSize=11
PopupMenu MN_TScaleMenu,mode=1,popvalue="Time Scale",value= #"\"Time Scale;---;Align;Time Begin;Time Step;Resample;Decimate;Interpolate;Redimension;XLabel;Xwave;---;Continuous;Episodic;---;sec;msec;usec;\""
PopupMenu MN_FxnMenu,pos={161,475},size={100,20},bodyWidth=100,proc=MainTabPopup
PopupMenu MN_FxnMenu,fSize=11
PopupMenu MN_FxnMenu,mode=1,popvalue="Operations",value= #"\"Operations;---;Scale by Num;Scale by Wave;Baseline;Normalize;Smooth;Blank;Integrate;Differentiate;2-Differentiate;Reverse;Sort;Delete NANs;NAN > 0;0 > Nan;---;Average;Sum;Concatenate;2D wave;IV;\""
CheckBox NM_WriteCheck,pos={20,615},size={103,15},proc=NMOverWriteCheckBox,title="OverWrite Mode"
CheckBox NM_WriteCheck,help={"overwrite waves and graphs"},fSize=11,value= 1
CheckBox NM_NMOK,pos={160,615},size={113,15},proc=NMAboutCheckBox,title="NeuroMatic v2.00"
CheckBox NM_NMOK,help={"About NeuroMatic"},fSize=11,value= 1
SetWindow kwTopWin,hook=NMPanelHook
EndMacro
9 #pragma rtGlobals=1 // Use modern global access method.